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Frederik Mølgaard Thayssen has worked for several companies since 2000. From 2000 to 2002, they were the Afdelingsleder at TJ Group A/S, with responsibility for developing and managing web-based e-commerce and CRM solutions. From 2002 to 2005, they worked as Produktionschef at TJ Group A/S. From 2005 to 2006, they were a Projektleder at Syddjurs Kommune. From 2006 to 2007, they were a Sektionsleder and part-time Projektleder at Region Midtjylland/Århus Universitshospital Århus Sygehus. From 2007 to 2015, they were a Senior Project Manager at MedTech Innovation Consortium and a Program Manager and Senior Project Manager at Danish Life Science Cluster from 2021 to 2021. Since 2021, they have worked as an Ekstern Lektor at Aarhus University, teaching courses in Project Management and Health and It Project Management. Most recently, they started as Principal Project Manager at Alexandra Instituttet in 2023.

Frederik Mølgaard Thayssen obtained a Master of Science in Geology from Aarhus University between 1986 and 1998. Frederik Mølgaard then went on to obtain a Master of Information Technology and Organisations from Aarhus University between 2006 and 2013. Frederik Mølgaard has also obtained a range of certifications, including Half Double Foundation from Implement Consulting Group in 2021, Lean Konsulentuddannelse from Valcon in 2008, PRINCE2™ Foundation Certification Training from Rovsing Management in 2008, ITIL Practitioner Service & Restore - IPSR from IBM in 2007, Innovationsleder from Teknologisk Institut in 2019, and IPMA C from IPMA: International Project Management Association in 2008.