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Kristian Stødkilde-Jørgensen started their work experience as a PhD Student at Aarhus University in November 2010 and completed it in February 2014. In February 2014, they joined Aarhus University as a Post Doc and worked until March 2017. From March 2017 to December 2020, they worked as an Assistant Professor at Aarhus University. In December 2020, they joined Muna Therapeutics as a Senior Scientist and worked until April 2023. Since January 2023, they have been serving as a Principal Scientist at Muna Therapeutics.

From 2005 to 2010, Kristian Stødkilde-Jørgensen attended Aarhus University, where they completed a Master of Science (M.S.) degree in Molecular Biology.